Print method for an object of class 'msdata'
Usage
# S3 method for class 'msdata'
print(x, trans = FALSE, ...)Arguments
- x
Object of class 'msdata', as prepared for instance by
msprep- trans
Boolean specifying whether or not the transition matrix should be printed as well; default is
FALSE- ...
Further arguments to print
Author
Hein Putter H.Putter@lumc.nl
Examples
# transition matrix for illness-death model
tmat <- trans.illdeath()
# some data in wide format
tg <- data.frame(stt=rep(0,6),sts=rep(0,6),
illt=c(1,1,6,6,8,9),ills=c(1,0,1,1,0,1),
dt=c(5,1,9,7,8,12),ds=c(1,1,1,1,1,1),
x1=c(1,1,1,2,2,2),x2=c(6:1))
tg$x1 <- factor(tg$x1,labels=c("male","female"))
tg$patid <- factor(2:7,levels=1:8,labels=as.character(1:8))
# define time, status and covariates also as matrices
tt <- matrix(c(rep(NA,6),tg$illt,tg$dt),6,3)
st <- matrix(c(rep(NA,6),tg$ills,tg$ds),6,3)
keepmat <- data.frame(gender=tg$x1,age=tg$x2)
# data in long format using msprep
msp <- msprep(time=tt,status=st,trans=tmat,keep=as.matrix(keepmat))
print(msp)
#> An object of class 'msdata'
#>
#> Data:
#> id from to trans Tstart Tstop time status keep1 keep2
#> 1 1 1 2 1 0 1 1 1 male 6
#> 2 1 1 3 2 0 1 1 0 male 6
#> 3 1 2 3 3 1 5 4 1 male 6
#> 4 2 1 2 1 0 1 1 0 male 5
#> 5 2 1 3 2 0 1 1 1 male 5
#> 6 3 1 2 1 0 6 6 1 male 4
#> 7 3 1 3 2 0 6 6 0 male 4
#> 8 3 2 3 3 6 9 3 1 male 4
#> 9 4 1 2 1 0 6 6 1 female 3
#> 10 4 1 3 2 0 6 6 0 female 3
#> 11 4 2 3 3 6 7 1 1 female 3
#> 12 5 1 2 1 0 8 8 0 female 2
#> 13 5 1 3 2 0 8 8 1 female 2
#> 14 6 1 2 1 0 9 9 1 female 1
#> 15 6 1 3 2 0 9 9 0 female 1
#> 16 6 2 3 3 9 12 3 1 female 1
print(msp, trans=TRUE)
#> An object of class 'msdata'
#>
#> Data:
#> id from to trans Tstart Tstop time status keep1 keep2
#> 1 1 1 2 1 0 1 1 1 male 6
#> 2 1 1 3 2 0 1 1 0 male 6
#> 3 1 2 3 3 1 5 4 1 male 6
#> 4 2 1 2 1 0 1 1 0 male 5
#> 5 2 1 3 2 0 1 1 1 male 5
#> 6 3 1 2 1 0 6 6 1 male 4
#> 7 3 1 3 2 0 6 6 0 male 4
#> 8 3 2 3 3 6 9 3 1 male 4
#> 9 4 1 2 1 0 6 6 1 female 3
#> 10 4 1 3 2 0 6 6 0 female 3
#> 11 4 2 3 3 6 7 1 1 female 3
#> 12 5 1 2 1 0 8 8 0 female 2
#> 13 5 1 3 2 0 8 8 1 female 2
#> 14 6 1 2 1 0 9 9 1 female 1
#> 15 6 1 3 2 0 9 9 0 female 1
#> 16 6 2 3 3 9 12 3 1 female 1
#>
#> Transition matrix:
#> to
#> from healthy illness death
#> healthy NA 1 2
#> illness NA NA 3
#> death NA NA NA